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Software

Webpages concerning "Software"

ETH Zuerich
http://cbrg.inf.ethz.ch/Darwin/index.html
Keywords:
ETH Zuerich

http://cbrg.inf.ethz.ch/Darwin/index.html

JAligner is an open source Java implementation of the Smith-Waterman algorithm with Gotoh's improvement for biological local pairwise sequence alignment using the affine gap penalty model.
http://jaligner.sourceforge.net/
Keywords:
jaligner, pairwise, local, java sequence alignment, affine gap, open source, smith-waterman algorithm

http://jaligner.sourceforge.net/

AnnHyb's home page
http://bioinformatics.org/annhyb/
Keywords:
bioinformatic, open, source, software, annhyb, nucleotide, sequence, manager, restriction, analysis, windows, DNA, alignment, annotation, tool

http://bioinformatics.org/annhyb/

Make biological discoveries through advanced bioinformatics programming
http://www.arraygenetics.com/product_overview.php3
Keywords:
bioinformatics programming, genome project, DNA microarray analysis, serial, analysis, of, gene, expression, Seqit, protein database mining, Nucit, oliognucleotide design, DNA database mining, genetics, cDNA, microarray, siRNA, RNAi

http://www.arraygenetics.com/product_overview.php3

An integrated sequence alignment linux environment for bioinformatics and evolutionary analysis based on the Genetic Data Environment (GDE). Download GDE for Linux.
http://www.bioafrica.net/GDElinux/index.html
Keywords:
GDE, download, sequence, alignment, program, linux, GDE for linux, bioinformatics, menu, GDE, download, linux, GDE for linux, bioinformatics, menu, GDE, download, linux, GDE for linux, sequence, alignment, program, bioinformatics, menu, genetic data environment, viruses, hiv, sequence, alignment, program

http://www.bioafrica.net/GDElinux/index.html

Lucidcentral.org is the home of the Lucid family of software which is used for the creation of identification and diagnostic keys.
http://www.lucidcentral.com/
Keywords:
keys, key, biology, biological keys, lucid, phoenix, lucidcentral, identification, identification keys, insects, identify, plants, animals, id, education, diagnostic keys, quarantine, biodiversity, biodiversity monitoring, taxonomic keys, matrix keys, dichotomous keys

http://www.lucidcentral.com/

metalife - with the knowledgebase developed by metalife and the corresponding bioinformatics-software tools, new standart for the future of intelligentbioinformatics are set
http://metalifesocieties.tripod.com/
Keywords:
metalife, bioinformatics, bioinformatics portal, genetics, genetic, gene, life science, research, biotechnology, computational biology, software, database

http://metalifesocieties.tripod.com/

PubCrawler - a free Update AlertingService for PubMed and GenBank (Home Page)
http://www.pubcrawler.ie
Keywords:
PubCrawler, Home Page, Update, Alert, Alerting Service, PubMed, GenBank, Journal, Article, Free

http://www.pubcrawler.ie

Sfold predicts probable RNA secondary structures, assesses target accessibility, and provides tools for the rational design of RNA-targeting nucleic acids.
http://sfold.wadsworth.org/index.pl
Keywords:
Sfold, Wadsworth Center, NYS, Department, of, Health, RNA, RNA structure, folding, antisense, ribozyme, Soligo, Sribo, Srna, siRNA, RNA interference, RNAi, algorithm, prediction, sampling, biology, chemistry, bioinformatics, statistical folding, nucleic acid

http://sfold.wadsworth.org/index.pl

WU-BLAST: increased speed, sensitivity, flexibility, robustness and scalability in sequence database searching, the BLAST for technical professionals.
http://blast.wustl.edu/
Keywords:
BLAST, WU-BLAST, WU BLAST, WUBLAST, WU_BLAST

http://blast.wustl.edu/

AbOrygen develops the next generation of bioinformatics software with powerful new features that simplify and improve the research work of life scientists worldwide.
http://www.aborygen.com
Keywords:
bioinformatics, sequence analysis, multiple sequence alignment, dna sequence analysis, protein analysis software, molecular biology software, multiple sequence analysis, dna, sequence, analysis, tools, proteomics, clustalw, protein protein interaction, restriction enzymes, 3d protein structure, pcr software, multiple protein alignment, genomics, protein ligand interaction, chromatogram, blastp, ...

http://www.aborygen.com

Ba-Bm
http://stommel.tamu.edu/~baum/linuxlist/linuxlist/node9.html#biochemistry
Keywords:
linuxlist

http://stommel.tamu.edu/~baum/linuxlist/linuxlist/node9.html#biochemistry

DNAStar Website, designed by ViV!D Web Design Group, LLC.
http://www.dnastar.com/
Keywords:
DNAStar

http://www.dnastar.com/

Online Gene Expression Data Simulator and Analysis tool.
http://bioinformatics.upmc.edu/GE2/GEDA.html
Keywords:
GEDA, GeneExpression, Gene, Expression, Data, Analysis, Microarray, Statistical Genomics, Machine learning, Bootstrap, Cross-Validation, Clustering, Differentially Expressed Genes, Cancer, Microarray Simulation, SAM, Microarray Analysis Software

http://bioinformatics.upmc.edu/GE2/GEDA.html

http://www.caspur.it/~castri/STRING/

http://www.caspur.it/~castri/STRING/

http://metameme.sdsc.edu/

http://metameme.sdsc.edu/

Scientific software for the molecular biologist. Performs virtual DNA cloning, analyses DNA for restriction enzymes, homing enzymes and primer sites, dam and dcm methylation sites, finds and translates open reading frames. Calculates annealing temperatures for PCR. Generates DNA/plasmid plots, virtual agarose gel plots, XY-homology plots - and more!
http://www.acaclone.com
Keywords:
DNA analysis, DNA sequence, DNA cloning, restriction enzyme digestion, oligonucleotide primer analysis, biology, clone, dam methylation, dcm methylation, digest, download, enzyme recognition sequence, freeware, gene, mapping, molecular biology, ORF, open, reading, frame, translation, genetic codes, scientific software, PCR temperature, Acaclone homepage, pDRAW, pDRAW32, pdraw, pdraw32, plasmid, ...

http://www.acaclone.com

http://www.genome.washington.edu/UWGC/analysistools/Phred.cfm

http://www.genome.washington.edu/UWGC/analysistools/Phred.cfm

Developers of software: Real time PCR primer design, including TaqMan,  molecular beacons, SYBR green, FRET assays, pathogen detection, species/taxa identification; DNA whole genome, expression, SNP detection and tiling microarray design software; software for drawing plasmid maps for restriction, TA and Gateway cloning technology.
http://www.PremierBiosoft.com

http://www.PremierBiosoft.com

http://www.arb-home.de

http://www.arb-home.de

http://www.sanger.ac.uk/Software/Artemis/
Keywords:
Artemis, Genome Annotation Tool, ACT, Sanger Institute, Sequence Annotation Tool, DNA, Pathogen Sequencing Unit, Kim Rutherford

http://www.sanger.ac.uk/Software/Artemis/

Xdigitise is a visualization software system for evaluation of hybridisation experiments.
http://www.molgen.mpg.de/~xdigitise/
Keywords:
Xdigitise, xdigitise, hybridization filter, array analysis, image analysis, visualization, Lehrach, institute, Max, Planck, molecular, genetics

http://www.molgen.mpg.de/~xdigitise/

http://www.phrap.org/

http://www.phrap.org/

http://bioinformatics.org/jSight/

http://bioinformatics.org/jSight/

http://gints.free.Fr

http://gints.free.Fr

http://logicaldepth.com/

http://logicaldepth.com/

http://www.ncbi.nlm.nih.gov/BLAST/

http://www.ncbi.nlm.nih.gov/BLAST/

http://www.informagen.com/SA/

http://www.informagen.com/SA/

http://www.sanger.ac.uk/Software/

http://www.sanger.ac.uk/Software/

http://www.cs.ucr.edu/~stelo/Verbumculus/

http://www.cs.ucr.edu/~stelo/Verbumculus/

http://bioinf.wehi.edu.au/limmaGUI/index.html

http://bioinf.wehi.edu.au/limmaGUI/index.html

http://pbil.univ-lyon1.fr/bibi/query.php

http://pbil.univ-lyon1.fr/bibi/query.php

http://www.rfcgr.mrc.ac.uk/Software/EMBOSS/

http://www.rfcgr.mrc.ac.uk/Software/EMBOSS/

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Wikipedia-Article "Software"

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